MetumpX-a metabolomics support package for untargeted mass spectrometry

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dc.contributor.authorWajid, Bilal
dc.contributor.authorIqbal, Hasan
dc.contributor.authorJamil, Momina
dc.contributor.authorRafique, Hafsa
dc.contributor.authorAnwar, Faria
dc.date.accessioned2021-01-25T21:47:59Z
dc.date.available2021-01-25T21:47:59Z
dc.date.issued2020
dc.departmentİstanbul Ticaret Üniversitesien_US
dc.descriptionIqbal, Hasan/0000-0001-5318-2918en_US
dc.descriptionWOS:000535656600049en_US
dc.descriptionPubMed: 31596440en_US
dc.description.abstractMotivation: Metabolomics is a data analysis and interpretation field aiming to study functions of small molecules within the organism. Consequently Metabolomics requires researchers in life sciences to be comfortable in downloading, installing and scripting of software that are mostly not user friendly and lack basic GUIs. As the researchers struggle with these skills, there is a dire need to develop software packages that can automatically install software pipelines truly speeding up the learning curve to build software workstations. Therefore, this paper aims to provide MetumpX, a software package that eases in the installation of 103 software by automatically resolving their individual dependencies and also allowing the users to choose which software works best for them. Results: MetumpX is a Ubuntu-based software package that facilitate easy download and installation of 103 tools spread across the standard metabolomics pipeline. As far as the authors know MetumpX is the only solution of its kind where the focus lies on automating development of software workstations.en_US
dc.description.sponsorship[SQ-2018-Bioinfo-1]en_US
dc.description.sponsorshipThe authors would like to thank Sabz-Qalam for supporting this work via grant SQ-2018-Bioinfo-1.en_US
dc.identifier.doi10.1093/bioinformatics/btz765en_US
dc.identifier.endpage1648en_US
dc.identifier.issn1367-4803
dc.identifier.issn1460-2059
dc.identifier.issue5en_US
dc.identifier.pmid31596440en_US
dc.identifier.scopus2-s2.0-85081126381en_US
dc.identifier.scopusqualityQ1en_US
dc.identifier.startpage1647en_US
dc.identifier.urihttps://doi.org/10.1093/bioinformatics/btz765
dc.identifier.urihttps://hdl.handle.net/11467/4475
dc.identifier.volume36en_US
dc.identifier.wosWOS:000535656600049en_US
dc.identifier.wosqualityQ1en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.indekslendigikaynakPubMeden_US
dc.language.isoenen_US
dc.publisherOXFORD UNIV PRESSen_US
dc.relation.ispartofBIOINFORMATICSen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - İdari Personel ve Öğrencien_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.titleMetumpX-a metabolomics support package for untargeted mass spectrometryen_US
dc.typeArticleen_US

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